Nictiz FHIR NL STU3 Zib2017 - Local Development build (v1.3.15) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
Resource Profile: HCIM LaboratoryTestResult Specimen Isolate
| Official URL: http://nictiz.nl/fhir/StructureDefinition/zib-LaboratoryTestResult-Specimen-Isolate | Version: 1.3.15 | |||
| Active as of 2025-09-22 | Computable Name: Zib LaboratoryTestResult Specimen Isolate | |||
Copyright/Legal: CC0 |
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The Specimen Microorganism details from the LaboratoryTestResult as defined by the Dutch Health and Care Information models (Dutch: Zorginformatiebouwsteen or ZIB) version 4.1, release 2017.
Usages:
- Refer to this Profile: HCIM LaboratoryTestResult DiagnosticReport, HCIM LaboratoryTestResult Observation and HCIM LaboratoryTestResult Specimen
You can also check for usages in the FHIR IG Statistics
Formal Views of Profile Content
Description of Profiles, Differentials, Snapshots and how the different presentations work.
This structure is derived from Specimen
Terminology Bindings (Differential)
| Path | Conformance | ValueSet | URI |
| Specimen.type | extensible | MicroorganismeCodelijst(a valid code from SNOMED CT)http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.10--20171231000000From this IG | |
| Specimen.collection.method | extensible | AfnameprocedureCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.2--20171231000000From this IG | |
| Specimen.collection.bodySite | extensible | MonsterAnatomischeLocatieCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.11--20171231000000From this IG | |
| Specimen.collection.bodySite.extension:laterality.valueCodeableConcept:valueCodeableConcept | extensible | LateraliteitCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.12--20171231000000From this IG | |
| Specimen.collection.bodySite.extension:morphology.valueCodeableConcept:valueCodeableConcept | extensible | MorfologieCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.13--20171231000000From this IG | |
| Specimen.container.type | extensible | ContainerTypeCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.9--20171231000000From this IG |
| Name | Flags | Card. | Type | Description & Constraints Filter:   |
|---|---|---|---|---|
  Specimen |
0..* | Specimen | Specimen | |
  implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created |
 modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored |
 identifier |
Σ | 0..* | Identifier | SpecimenId |
| status |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. |
| type |
Σ | 0..1 | CodeableConcept | Microorganism Binding: MicroorganismeCodelijst (extensible) |
 subject |
Σ | 1..1 | Reference(nl-core-patient | Group | HCIM MedicalDevice Product | Substance) | SpecimenSource |
| receivedTime |
Σ | 0..1 | dateTime | ReceivedDateTime |
| parent |
0..* | Reference(HCIM LaboratoryTestResult Specimen) | Specimen from which this specimen originated | |
 container |
0..* | BackboneElement | SpecimenContainer | |
 modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored |
| identifier |
Σ | 0..* | Identifier | SpecimenNumberExtension |
 type |
0..1 | CodeableConcept | ContainerType Binding: ContainerTypeCodelijst (extensible): ContainerTypeCodelist | |
| note |
0..* | Annotation | Comment | |
| Documentation for this format | ||||
Terminology Bindings
| Path | Conformance | ValueSet | URI |
| Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|3.0.2From the FHIR Standard | |
| Specimen.type | extensible | MicroorganismeCodelijst(a valid code from SNOMED CT)http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.10--20171231000000From this IG | |
| Specimen.container.type | extensible | ContainerTypeCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.9--20171231000000From this IG |
Constraints
| Id | Grade | Path(s) | Details | Requirements |
| dom-1 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain any narrative : contained.text.empty() | |
| dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
| dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource : contained.where(('#'+id in %resource.descendants().reference).not()).empty() | |
| dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() | (children().count() > id.count()) |
| Name | Flags | Card. | Type | Description & Constraints Filter: | ||||
|---|---|---|---|---|---|---|---|---|
| Specimen |
0..* | Specimen | Specimen | |||||
| id |
Σ | 0..1 | id | Logical id of this artifact | ||||
| meta |
Σ | 0..1 | Meta | Metadata about the resource | ||||
| implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
| language |
0..1 | code | Language of the resource content Binding: Common Languages (extensible): A human language.
| |||||
| text |
0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements | |||||
| contained |
0..* | Resource | Contained, inline Resources | |||||
 extension |
0..* | Extension | Additional Content defined by implementations | |||||
| modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored | ||||
| identifier |
Σ | 0..* | Identifier | SpecimenId | ||||
| accessionIdentifier |
Σ | 0..1 | Identifier | Identifier assigned by the lab | ||||
| status |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. | ||||
| type |
Σ | 0..1 | CodeableConcept | Microorganism Binding: MicroorganismeCodelijst (extensible) | ||||
| subject |
Σ | 1..1 | Reference(nl-core-patient | Group | HCIM MedicalDevice Product | Substance) | SpecimenSource | ||||
| receivedTime |
Σ | 0..1 | dateTime | ReceivedDateTime | ||||
| parent |
0..* | Reference(HCIM LaboratoryTestResult Specimen) | Specimen from which this specimen originated | |||||
| request |
0..* | Reference(ProcedureRequest) | Why the specimen was collected | |||||
| collection |
0..1 | BackboneElement | Collection details | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
| collector |
Σ | 0..1 | Reference(Practitioner) | Who collected the specimen | ||||
 Slices for collected[x] |
Σ | 0..1 | Collection time Slice: Unordered, Closed by type:$this | |||||
 collectedDateTime |
dateTime | |||||||
| collectedPeriod |
Period | |||||||
 collected[x]:collectedDateTime |
Σ | 0..1 | dateTime | CollectionDateTime | ||||
 collected[x]:collectedPeriod |
Σ | 0..1 | Period | CollectionPeriod | ||||
  id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
 Slices for extension |
0..* | Extension | Extension Slice: Unordered, Open by value:url | |||||
  extension:period-duration |
0..1 | Duration | Extension URL: http://nictiz.nl/fhir/StructureDefinition/period-duration | |||||
| start |
ΣC | 0..1 | dateTime | Starting time with inclusive boundary | ||||
 end |
ΣC | 0..1 | dateTime | End time with inclusive boundary, if not ongoing | ||||
| quantity |
0..1 | SimpleQuantity | CollectedVolume | |||||
| method |
0..1 | CodeableConcept | CollectionMethod Binding: AfnameprocedureCodelijst (extensible) | |||||
 bodySite |
0..1 | CodeableConcept | AnatomicalLocation Binding: MonsterAnatomischeLocatieCodelijst (extensible): SpecimenAnatomicalLocationCodelist | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| Slices for extension |
0..* | Extension | Extension Slice: Unordered, Open by value:url | |||||
 extension:laterality |
0..* | (Complex) | Laterality URL: http://nictiz.nl/fhir/StructureDefinition/BodySite-Qualifier | |||||
 id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations Slice: Unordered, Open by value:url | |||||
| url |
1..1 | uri | "http://nictiz.nl/fhir/StructureDefinition/BodySite-Qualifier" | |||||
 Slices for value[x] |
0..1 | CodeableConcept | Value of extension Slice: Unordered, Closed by type:$this | |||||
| value[x]:valueCodeableConcept |
0..1 | CodeableConcept | BodySite qualifier Binding: LateraliteitCodelijst (extensible): LateralityCodelist | |||||
| extension:morphology |
0..* | (Complex) | Morphology URL: http://nictiz.nl/fhir/StructureDefinition/BodySite-Morphology | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations Slice: Unordered, Open by value:url | |||||
| url |
1..1 | uri | "http://nictiz.nl/fhir/StructureDefinition/BodySite-Morphology" | |||||
| Slices for value[x] |
0..1 | CodeableConcept | Value of extension Slice: Unordered, Closed by type:$this | |||||
| value[x]:valueCodeableConcept |
0..1 | CodeableConcept | BodySite morphology Binding: MorfologieCodelijst (extensible): MorphologyCodelist | |||||
| coding |
Σ | 0..* | Coding | Code defined by a terminology system | ||||
| text |
Σ | 0..1 | string | Plain text representation of the concept | ||||
| processing |
0..* | BackboneElement | Processing and processing step details | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
| description |
0..1 | string | Textual description of procedure | |||||
| procedure |
0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen | |||||
| additive |
0..* | Reference(Substance) | Material used in the processing step | |||||
 time[x] |
0..1 | Date and time of specimen processing | ||||||
| timeDateTime |
dateTime | |||||||
| timePeriod |
Period | |||||||
| container |
0..* | BackboneElement | SpecimenContainer | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
| identifier |
Σ | 0..* | Identifier | SpecimenNumberExtension | ||||
| description |
0..1 | string | Textual description of the container | |||||
| type |
0..1 | CodeableConcept | ContainerType Binding: ContainerTypeCodelijst (extensible): ContainerTypeCodelist | |||||
| capacity |
0..1 | SimpleQuantity | Container volume or size | |||||
| specimenQuantity |
0..1 | SimpleQuantity | Quantity of specimen within container | |||||
| additive[x] |
0..1 | Additive associated with container Binding: v2 Additive/Preservative (example): Substance added to specimen container | ||||||
| additiveCodeableConcept |
CodeableConcept | |||||||
| additiveReference |
Reference(Substance) | |||||||
| note |
0..* | Annotation | Comment | |||||
| Documentation for this format | ||||||||
Terminology Bindings
| Path | Conformance | ValueSet | URI | |||
| Specimen.language | extensible | Common Languageshttp://hl7.org/fhir/ValueSet/languages|3.0.2From the FHIR Standard
| ||||
| Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|3.0.2From the FHIR Standard | ||||
| Specimen.type | extensible | MicroorganismeCodelijst(a valid code from SNOMED CT)http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.10--20171231000000From this IG | ||||
| Specimen.collection.method | extensible | AfnameprocedureCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.2--20171231000000From this IG | ||||
| Specimen.collection.bodySite | extensible | MonsterAnatomischeLocatieCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.11--20171231000000From this IG | ||||
| Specimen.collection.bodySite.extension:laterality.value[x]:valueCodeableConcept | extensible | LateraliteitCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.12--20171231000000From this IG | ||||
| Specimen.collection.bodySite.extension:morphology.value[x]:valueCodeableConcept | extensible | MorfologieCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.13--20171231000000From this IG | ||||
| Specimen.processing.procedure | example | SpecimenProcessingProcedurehttp://hl7.org/fhir/ValueSet/specimen-processing-procedure|3.0.2From the FHIR Standard | ||||
| Specimen.container.type | extensible | ContainerTypeCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.9--20171231000000From this IG | ||||
| Specimen.container.additive[x] | example | v2 Additive/Preservativehttp://hl7.org/fhir/ValueSet/v2-0371|2.8.2From the FHIR Standard |
Constraints
| Id | Grade | Path(s) | Details | Requirements |
| dom-1 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain any narrative : contained.text.empty() | |
| dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
| dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource : contained.where(('#'+id in %resource.descendants().reference).not()).empty() | |
| dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() | (children().count() > id.count()) |
This structure is derived from Specimen
Summary
Structures
This structure refers to these other structures:
- nl-core-patient (http://fhir.nl/fhir/StructureDefinition/nl-core-patient)
- HCIM MedicalDevice Product (http://nictiz.nl/fhir/StructureDefinition/zib-MedicalDeviceProduct)
- HCIM LaboratoryTestResult Specimen (http://nictiz.nl/fhir/StructureDefinition/zib-LaboratoryTestResult-Specimen)
Extensions
This structure refers to these extensions:
- http://nictiz.nl/fhir/StructureDefinition/period-duration
- http://nictiz.nl/fhir/StructureDefinition/BodySite-Qualifier
- http://nictiz.nl/fhir/StructureDefinition/BodySite-Morphology
Slices
This structure defines the following Slices:
- The element 1 is sliced based on the value of Specimen.collection.collected[x]
Differential View
This structure is derived from Specimen
Terminology Bindings (Differential)
| Path | Conformance | ValueSet | URI |
| Specimen.type | extensible | MicroorganismeCodelijst(a valid code from SNOMED CT)http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.10--20171231000000From this IG | |
| Specimen.collection.method | extensible | AfnameprocedureCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.2--20171231000000From this IG | |
| Specimen.collection.bodySite | extensible | MonsterAnatomischeLocatieCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.11--20171231000000From this IG | |
| Specimen.collection.bodySite.extension:laterality.valueCodeableConcept:valueCodeableConcept | extensible | LateraliteitCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.12--20171231000000From this IG | |
| Specimen.collection.bodySite.extension:morphology.valueCodeableConcept:valueCodeableConcept | extensible | MorfologieCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.13--20171231000000From this IG | |
| Specimen.container.type | extensible | ContainerTypeCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.9--20171231000000From this IG |
Key Elements View
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Specimen |
0..* | Specimen | Specimen | |
| implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created |
| modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored |
| identifier |
Σ | 0..* | Identifier | SpecimenId |
| status |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. |
| type |
Σ | 0..1 | CodeableConcept | Microorganism Binding: MicroorganismeCodelijst (extensible) |
| subject |
Σ | 1..1 | Reference(nl-core-patient | Group | HCIM MedicalDevice Product | Substance) | SpecimenSource |
| receivedTime |
Σ | 0..1 | dateTime | ReceivedDateTime |
| parent |
0..* | Reference(HCIM LaboratoryTestResult Specimen) | Specimen from which this specimen originated | |
| container |
0..* | BackboneElement | SpecimenContainer | |
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored |
| identifier |
Σ | 0..* | Identifier | SpecimenNumberExtension |
| type |
0..1 | CodeableConcept | ContainerType Binding: ContainerTypeCodelijst (extensible): ContainerTypeCodelist | |
| note |
0..* | Annotation | Comment | |
| Documentation for this format | ||||
Terminology Bindings
| Path | Conformance | ValueSet | URI |
| Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|3.0.2From the FHIR Standard | |
| Specimen.type | extensible | MicroorganismeCodelijst(a valid code from SNOMED CT)http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.10--20171231000000From this IG | |
| Specimen.container.type | extensible | ContainerTypeCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.9--20171231000000From this IG |
Constraints
| Id | Grade | Path(s) | Details | Requirements |
| dom-1 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain any narrative : contained.text.empty() | |
| dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
| dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource : contained.where(('#'+id in %resource.descendants().reference).not()).empty() | |
| dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() | (children().count() > id.count()) |
Snapshot View
| Name | Flags | Card. | Type | Description & Constraints Filter: | ||||
|---|---|---|---|---|---|---|---|---|
| Specimen |
0..* | Specimen | Specimen | |||||
| id |
Σ | 0..1 | id | Logical id of this artifact | ||||
| meta |
Σ | 0..1 | Meta | Metadata about the resource | ||||
| implicitRules |
?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
| language |
0..1 | code | Language of the resource content Binding: Common Languages (extensible): A human language.
| |||||
| text |
0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements | |||||
| contained |
0..* | Resource | Contained, inline Resources | |||||
| extension |
0..* | Extension | Additional Content defined by implementations | |||||
| modifierExtension |
?! | 0..* | Extension | Extensions that cannot be ignored | ||||
| identifier |
Σ | 0..* | Identifier | SpecimenId | ||||
| accessionIdentifier |
Σ | 0..1 | Identifier | Identifier assigned by the lab | ||||
| status |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. | ||||
| type |
Σ | 0..1 | CodeableConcept | Microorganism Binding: MicroorganismeCodelijst (extensible) | ||||
| subject |
Σ | 1..1 | Reference(nl-core-patient | Group | HCIM MedicalDevice Product | Substance) | SpecimenSource | ||||
| receivedTime |
Σ | 0..1 | dateTime | ReceivedDateTime | ||||
| parent |
0..* | Reference(HCIM LaboratoryTestResult Specimen) | Specimen from which this specimen originated | |||||
| request |
0..* | Reference(ProcedureRequest) | Why the specimen was collected | |||||
| collection |
0..1 | BackboneElement | Collection details | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
| collector |
Σ | 0..1 | Reference(Practitioner) | Who collected the specimen | ||||
| Slices for collected[x] |
Σ | 0..1 | Collection time Slice: Unordered, Closed by type:$this | |||||
| collectedDateTime |
dateTime | |||||||
| collectedPeriod |
Period | |||||||
| collected[x]:collectedDateTime |
Σ | 0..1 | dateTime | CollectionDateTime | ||||
| collected[x]:collectedPeriod |
Σ | 0..1 | Period | CollectionPeriod | ||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| Slices for extension |
0..* | Extension | Extension Slice: Unordered, Open by value:url | |||||
| extension:period-duration |
0..1 | Duration | Extension URL: http://nictiz.nl/fhir/StructureDefinition/period-duration | |||||
| start |
ΣC | 0..1 | dateTime | Starting time with inclusive boundary | ||||
| end |
ΣC | 0..1 | dateTime | End time with inclusive boundary, if not ongoing | ||||
| quantity |
0..1 | SimpleQuantity | CollectedVolume | |||||
| method |
0..1 | CodeableConcept | CollectionMethod Binding: AfnameprocedureCodelijst (extensible) | |||||
| bodySite |
0..1 | CodeableConcept | AnatomicalLocation Binding: MonsterAnatomischeLocatieCodelijst (extensible): SpecimenAnatomicalLocationCodelist | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| Slices for extension |
0..* | Extension | Extension Slice: Unordered, Open by value:url | |||||
| extension:laterality |
0..* | (Complex) | Laterality URL: http://nictiz.nl/fhir/StructureDefinition/BodySite-Qualifier | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations Slice: Unordered, Open by value:url | |||||
| url |
1..1 | uri | "http://nictiz.nl/fhir/StructureDefinition/BodySite-Qualifier" | |||||
| Slices for value[x] |
0..1 | CodeableConcept | Value of extension Slice: Unordered, Closed by type:$this | |||||
| value[x]:valueCodeableConcept |
0..1 | CodeableConcept | BodySite qualifier Binding: LateraliteitCodelijst (extensible): LateralityCodelist | |||||
| extension:morphology |
0..* | (Complex) | Morphology URL: http://nictiz.nl/fhir/StructureDefinition/BodySite-Morphology | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations Slice: Unordered, Open by value:url | |||||
| url |
1..1 | uri | "http://nictiz.nl/fhir/StructureDefinition/BodySite-Morphology" | |||||
| Slices for value[x] |
0..1 | CodeableConcept | Value of extension Slice: Unordered, Closed by type:$this | |||||
| value[x]:valueCodeableConcept |
0..1 | CodeableConcept | BodySite morphology Binding: MorfologieCodelijst (extensible): MorphologyCodelist | |||||
| coding |
Σ | 0..* | Coding | Code defined by a terminology system | ||||
| text |
Σ | 0..1 | string | Plain text representation of the concept | ||||
| processing |
0..* | BackboneElement | Processing and processing step details | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
| description |
0..1 | string | Textual description of procedure | |||||
| procedure |
0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen | |||||
| additive |
0..* | Reference(Substance) | Material used in the processing step | |||||
| time[x] |
0..1 | Date and time of specimen processing | ||||||
| timeDateTime |
dateTime | |||||||
| timePeriod |
Period | |||||||
| container |
0..* | BackboneElement | SpecimenContainer | |||||
| id |
0..1 | string | xml:id (or equivalent in JSON) | |||||
| extension |
0..* | Extension | Additional Content defined by implementations | |||||
| modifierExtension |
?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
| identifier |
Σ | 0..* | Identifier | SpecimenNumberExtension | ||||
| description |
0..1 | string | Textual description of the container | |||||
| type |
0..1 | CodeableConcept | ContainerType Binding: ContainerTypeCodelijst (extensible): ContainerTypeCodelist | |||||
| capacity |
0..1 | SimpleQuantity | Container volume or size | |||||
| specimenQuantity |
0..1 | SimpleQuantity | Quantity of specimen within container | |||||
| additive[x] |
0..1 | Additive associated with container Binding: v2 Additive/Preservative (example): Substance added to specimen container | ||||||
| additiveCodeableConcept |
CodeableConcept | |||||||
| additiveReference |
Reference(Substance) | |||||||
| note |
0..* | Annotation | Comment | |||||
| Documentation for this format | ||||||||
Terminology Bindings
| Path | Conformance | ValueSet | URI | |||
| Specimen.language | extensible | Common Languageshttp://hl7.org/fhir/ValueSet/languages|3.0.2From the FHIR Standard
| ||||
| Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|3.0.2From the FHIR Standard | ||||
| Specimen.type | extensible | MicroorganismeCodelijst(a valid code from SNOMED CT)http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.10--20171231000000From this IG | ||||
| Specimen.collection.method | extensible | AfnameprocedureCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.2--20171231000000From this IG | ||||
| Specimen.collection.bodySite | extensible | MonsterAnatomischeLocatieCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.11--20171231000000From this IG | ||||
| Specimen.collection.bodySite.extension:laterality.value[x]:valueCodeableConcept | extensible | LateraliteitCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.12--20171231000000From this IG | ||||
| Specimen.collection.bodySite.extension:morphology.value[x]:valueCodeableConcept | extensible | MorfologieCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.13--20171231000000From this IG | ||||
| Specimen.processing.procedure | example | SpecimenProcessingProcedurehttp://hl7.org/fhir/ValueSet/specimen-processing-procedure|3.0.2From the FHIR Standard | ||||
| Specimen.container.type | extensible | ContainerTypeCodelijsthttp://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.13.1.9--20171231000000From this IG | ||||
| Specimen.container.additive[x] | example | v2 Additive/Preservativehttp://hl7.org/fhir/ValueSet/v2-0371|2.8.2From the FHIR Standard |
Constraints
| Id | Grade | Path(s) | Details | Requirements |
| dom-1 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain any narrative : contained.text.empty() | |
| dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
| dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource : contained.where(('#'+id in %resource.descendants().reference).not()).empty() | |
| dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() | (children().count() > id.count()) |
This structure is derived from Specimen
Summary
Structures
This structure refers to these other structures:
- nl-core-patient (http://fhir.nl/fhir/StructureDefinition/nl-core-patient)
- HCIM MedicalDevice Product (http://nictiz.nl/fhir/StructureDefinition/zib-MedicalDeviceProduct)
- HCIM LaboratoryTestResult Specimen (http://nictiz.nl/fhir/StructureDefinition/zib-LaboratoryTestResult-Specimen)
Extensions
This structure refers to these extensions:
- http://nictiz.nl/fhir/StructureDefinition/period-duration
- http://nictiz.nl/fhir/StructureDefinition/BodySite-Qualifier
- http://nictiz.nl/fhir/StructureDefinition/BodySite-Morphology
Slices
This structure defines the following Slices:
- The element 1 is sliced based on the value of Specimen.collection.collected[x]
Other representations of profile: CSV, Excel, Schematron